Detailed information of SNP:
|
SNP ID:
sf1125721437(Gbrowse)
Chromosome: chr11 Position: 25721437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 91.15% | 8.85% |
| All Indica | 792 | 85.61% | 14.39% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 80.91% | 19.09% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 208 | 82.21% | 17.79% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125721437 | G->A | INTERGENIC | None |