Detailed information of SNP:
|
SNP ID:
sf1125726561(Gbrowse)
Chromosome: chr11 Position: 25726561 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 50.25% | 49.75% |
| All Indica | 782 | 59.34% | 40.66% |
| All Japonica | 492 | 35.77% | 64.23% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 375 | 75.20% | 24.80% |
| Indica II | 205 | 24.88% | 75.12% |
| Indica Intermediate | 202 | 64.85% | 35.15% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 64 | 35.94% | 64.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125726561 | C->T | INTERGENIC | None |