Detailed information of SNP:
|
SNP ID:
sf1125735821(Gbrowse)
Chromosome: chr11 Position: 25735821 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 65.15% | 34.85% |
| All Indica | 785 | 78.60% | 21.40% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 369 | 70.73% | 29.27% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 203 | 81.77% | 18.23% |
| Temperate Japonica | 335 | 29.85% | 70.15% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125735821 | G->A | INTERGENIC | None |