Detailed information of SNP:
SNP ID:
sf1125735821(Gbrowse)
Chromosome: chr11 Position: 25735821 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1403 | 65.15% | 34.85% |
All Indica | 785 | 78.60% | 21.40% |
All Japonica | 497 | 41.05% | 58.95% |
Aus | 66 | 80.30% | 19.70% |
Indica I | 369 | 70.73% | 29.27% |
Indica II | 213 | 89.20% | 10.80% |
Indica Intermediate | 203 | 81.77% | 18.23% |
Temperate Japonica | 335 | 29.85% | 70.15% |
Tropical Japonica | 94 | 80.85% | 19.15% |
Japonica Intermediate | 68 | 41.18% | 58.82% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1125735821 | G->A | INTERGENIC | None |