Detailed information of SNP:
|
SNP ID:
sf1125741792(Gbrowse)
Chromosome: chr11 Position: 25741792 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.32% | 12.68% |
| All Indica | 799 | 82.23% | 17.77% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125741792 | C->T | LOC_Os11g43410(LOC_Os11g43410.1) | Non-Synonymous SNP |