Detailed information of SNP:
|
SNP ID:
sf1125746408(Gbrowse)
Chromosome: chr11 Position: 25746408 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 59.30% | 40.70% |
| All Indica | 798 | 39.22% | 60.78% |
| All Japonica | 474 | 94.30% | 5.70% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 375 | 22.93% | 77.07% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 86 | 82.56% | 17.44% |
| Japonica Intermediate | 54 | 94.44% | 5.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125746408 | T->C | LOC_Os11g43420(LOC_Os11g43420.1) | Synonymous |