Detailed information of SNP:
|
SNP ID:
sf1125752291(Gbrowse)
Chromosome: chr11 Position: 25752291 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.57% | 28.43% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 494 | 51.42% | 48.58% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 334 | 44.61% | 55.39% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125752291 | C->T | INTERGENIC | None |