Detailed information of SNP:
|
SNP ID:
sf1125752345(Gbrowse)
Chromosome: chr11 Position: 25752345 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 74.75% | 25.25% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 48.09% | 51.91% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 39.10% | 60.90% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125752345 | T->C | INTERGENIC | None |