Detailed information of SNP:
|
SNP ID:
sf1125752581(Gbrowse)
Chromosome: chr11 Position: 25752581 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 53.82% | 46.18% |
| All Indica | 797 | 34.50% | 65.50% |
| All Japonica | 482 | 93.36% | 6.64% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 373 | 29.22% | 70.78% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 322 | 98.45% | 1.55% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125752581 | G->A | INTERGENIC | None |