Detailed information of SNP:
|
SNP ID:
sf1125791202(Gbrowse)
Chromosome: chr11 Position: 25791202 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.04% | 19.96% |
| All Indica | 798 | 72.81% | 27.19% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 30.19% | 69.81% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125791202 | G->A | INTERGENIC | None |