Detailed information of SNP:
|
SNP ID:
sf1125802371(Gbrowse)
Chromosome: chr11 Position: 25802371 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 61.24% | 38.76% |
| All Indica | 796 | 48.24% | 51.76% |
| All Japonica | 496 | 83.67% | 16.33% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 375 | 30.93% | 69.07% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125802371 | A->G | INTERGENIC | None |