Detailed information of SNP:
|
SNP ID:
sf1125804156(Gbrowse)
Chromosome: chr11 Position: 25804156 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.75% | 39.25% |
| All Indica | 799 | 47.81% | 52.19% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125804156 | C->A | INTERGENIC | None |