Detailed information of SNP:
|
SNP ID:
sf1125820434(Gbrowse)
Chromosome: chr11 Position: 25820434 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.98% | 22.02% |
| All Indica | 797 | 67.63% | 32.37% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 60.70% | 39.30% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125820434 | A->G | INTERGENIC | None |