Detailed information of SNP:
|
SNP ID:
sf1125826535(Gbrowse)
Chromosome: chr11 Position: 25826535 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 63.57% | 36.43% |
| All Indica | 789 | 47.15% | 52.85% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 369 | 40.38% | 59.62% |
| Indica II | 211 | 29.86% | 70.14% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125826535 | G->A | INTERGENIC | None |