Detailed information of SNP:
|
SNP ID:
sf1125826665(Gbrowse)
Chromosome: chr11 Position: 25826665 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.33% | 15.67% |
| All Indica | 798 | 73.43% | 26.57% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125826665 | C->T | INTERGENIC | None |