Detailed information of SNP:
|
SNP ID:
sf1125834495(Gbrowse)
Chromosome: chr11 Position: 25834495 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 68.62% | 31.38% |
| All Indica | 795 | 67.17% | 32.83% |
| All Japonica | 497 | 76.46% | 23.54% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 211 | 39.34% | 60.66% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125834495 | A->G | LOC_Os11g43600(LOC_Os11g43600.1) | SNPs that introduce initiation codons |