Detailed information of SNP:
|
SNP ID:
sf1125841226(Gbrowse)
Chromosome: chr11 Position: 25841226 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.17% | 40.83% |
| All Indica | 798 | 52.88% | 47.12% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 212 | 26.42% | 73.58% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125841226 | A->C | INTERGENIC | None |