Detailed information of SNP:
|
SNP ID:
sf1125854074(Gbrowse)
Chromosome: chr11 Position: 25854074 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.42% | 4.58% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125854074 | C->T | INTERGENIC | None |