Detailed information of SNP:
|
SNP ID:
sf1125855741(Gbrowse)
Chromosome: chr11 Position: 25855741 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.71% | 17.29% |
| All Indica | 797 | 71.02% | 28.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125855741 | G->A | INTERGENIC | None |