Detailed information of SNP:
|
SNP ID:
sf1125857070(Gbrowse)
Chromosome: chr11 Position: 25857070 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.38% | 31.62% |
| All Indica | 798 | 75.19% | 24.81% |
| All Japonica | 497 | 54.53% | 45.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 72.46% | 27.54% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 41.49% | 58.51% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125857070 | A->G | INTERGENIC | None |