Detailed information of SNP:
|
SNP ID:
sf1125857542(Gbrowse)
Chromosome: chr11 Position: 25857542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 56.20% | 43.80% |
| All Indica | 794 | 32.12% | 67.88% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 65 | 27.69% | 72.31% |
| Indica I | 375 | 22.40% | 77.60% |
| Indica II | 210 | 26.67% | 73.33% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125857542 | C->T | INTERGENIC | None |