Detailed information of SNP:
|
SNP ID:
sf1125859969(Gbrowse)
Chromosome: chr11 Position: 25859969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 74.35% | 25.65% |
| All Indica | 799 | 59.82% | 40.18% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 33.33% | 66.67% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125859969 | G->A | INTERGENIC | None |