Detailed information of SNP:
|
SNP ID:
sf1125861833(Gbrowse)
Chromosome: chr11 Position: 25861833 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.82% | 20.18% |
| All Indica | 799 | 75.84% | 24.16% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 76.72% | 23.28% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125861833 | A->G | INTERGENIC | None |