Detailed information of SNP:
|
SNP ID:
sf1125866474(Gbrowse)
Chromosome: chr11 Position: 25866474 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 79.66% | 20.34% |
| All Indica | 791 | 82.05% | 17.95% |
| All Japonica | 487 | 76.59% | 23.41% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 205 | 77.07% | 22.93% |
| Temperate Japonica | 326 | 69.02% | 30.98% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125866474 | C->A | INTERGENIC | None |