Detailed information of SNP:
|
SNP ID:
sf1125867545(Gbrowse)
Chromosome: chr11 Position: 25867545 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 85.86% | 14.14% |
| All Indica | 794 | 91.18% | 8.82% |
| All Japonica | 497 | 77.67% | 22.33% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 335 | 76.12% | 23.88% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125867545 | A->G | INTERGENIC | None |