Detailed information of SNP:
|
SNP ID:
sf1125873096(Gbrowse)
Chromosome: chr11 Position: 25873096 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 83.53% | 16.47% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 493 | 70.39% | 29.61% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 90 | 40.00% | 60.00% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125873096 | T->G | INTERGENIC | None |