Detailed information of SNP:
|
SNP ID:
sf1125873501(Gbrowse)
Chromosome: chr11 Position: 25873501 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 72.44% | 27.56% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 494 | 42.91% | 57.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 332 | 24.70% | 75.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125873501 | G->A | INTERGENIC | None |