Detailed information of SNP:
|
SNP ID:
sf1125874610(Gbrowse)
Chromosome: chr11 Position: 25874610 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 60.33% | 39.67% |
| All Indica | 797 | 58.34% | 41.66% |
| All Japonica | 494 | 66.60% | 33.40% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 70.86% | 29.14% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 210 | 60.95% | 39.05% |
| Temperate Japonica | 333 | 78.98% | 21.02% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125874610 | C->T | INTERGENIC | None |