Detailed information of SNP:
|
SNP ID:
sf1125875324(Gbrowse)
Chromosome: chr11 Position: 25875324 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 79.34% | 20.66% |
| All Indica | 795 | 87.80% | 12.20% |
| All Japonica | 486 | 64.61% | 35.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 324 | 53.70% | 46.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125875324 | C->T | INTERGENIC | None |