Detailed information of SNP:
|
SNP ID:
sf1125910965(Gbrowse)
Chromosome: chr11 Position: 25910965 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 56.71% | 43.29% |
| All Indica | 786 | 47.33% | 52.67% |
| All Japonica | 492 | 68.70% | 31.30% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 371 | 47.71% | 52.29% |
| Indica II | 211 | 44.08% | 55.92% |
| Indica Intermediate | 204 | 50.00% | 50.00% |
| Temperate Japonica | 334 | 64.67% | 35.33% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125910965 | T->C | INTERGENIC | None |