Detailed information of SNP:
|
SNP ID:
sf1125915055(Gbrowse)
Chromosome: chr11 Position: 25915055 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 74.52% | 25.48% |
| All Indica | 796 | 76.63% | 23.37% |
| All Japonica | 495 | 74.14% | 25.86% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 373 | 83.91% | 16.09% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125915055 | G->C | INTERGENIC | None |