Detailed information of SNP:
|
SNP ID:
sf1125918170(Gbrowse)
Chromosome: chr11 Position: 25918170 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 59.31% | 40.69% |
| All Indica | 789 | 47.78% | 52.22% |
| All Japonica | 488 | 84.22% | 15.78% |
| Aus | 64 | 1.56% | 98.44% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 206 | 46.60% | 53.40% |
| Indica Intermediate | 208 | 46.15% | 53.85% |
| Temperate Japonica | 333 | 89.49% | 10.51% |
| Tropical Japonica | 91 | 72.53% | 27.47% |
| Japonica Intermediate | 64 | 73.44% | 26.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125918170 | T->C | INTERGENIC | None |