Detailed information of SNP:
|
SNP ID:
sf1125919474(Gbrowse)
Chromosome: chr11 Position: 25919474 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 52.20% | 47.80% |
| All Indica | 799 | 45.31% | 54.69% |
| All Japonica | 490 | 66.94% | 33.06% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 333 | 65.77% | 34.23% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125919474 | C->G | INTERGENIC | None |