Detailed information of SNP:
|
SNP ID:
sf1125923918(Gbrowse)
Chromosome: chr11 Position: 25923918 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 61.10% | 38.90% |
| All Indica | 799 | 43.18% | 56.82% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 46.93% | 53.07% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125923918 | A->G | LOC_Os11g43710(LOC_Os11g43710.1) | Synonymous |