Detailed information of SNP:
|
SNP ID:
sf1125931617(Gbrowse)
Chromosome: chr11 Position: 25931617 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 68.10% | 31.90% |
| All Indica | 799 | 52.57% | 47.43% |
| All Japonica | 495 | 89.29% | 10.71% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 213 | 50.70% | 49.30% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125931617 | T->C | LOC_Os11g43729(LOC_Os11g43729.1) | INTRON |