Detailed information of SNP:
|
SNP ID:
sf1125958980(Gbrowse)
Chromosome: chr11 Position: 25958980 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 93.57% | 6.43% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 452 | 81.42% | 18.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 293 | 73.04% | 26.96% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125958980 | T->C | INTERGENIC | None |