Detailed information of SNP:
|
SNP ID:
sf1125964125(Gbrowse)
Chromosome: chr11 Position: 25964125 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 73.20% | 26.80% |
| All Indica | 796 | 58.04% | 41.96% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 56.95% | 43.05% |
| Indica II | 212 | 45.28% | 54.72% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125964125 | G->C | LOC_Os11g43760(LOC_Os11g43760.1) | INTRON |