Detailed information of SNP:
|
SNP ID:
sf1125972112(Gbrowse)
Chromosome: chr11 Position: 25972112 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 76.20% | 23.80% |
| All Indica | 794 | 63.73% | 36.27% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 206 | 52.91% | 47.09% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125972112 | T->C | LOC_Os11g43770(LOC_Os11g43770.1) | Non-Synonymous SNP |