Detailed information of SNP:
|
SNP ID:
sf1125974172(Gbrowse)
Chromosome: chr11 Position: 25974172 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.47% | 38.53% |
| All Indica | 799 | 39.30% | 60.70% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125974172 | T->C | LOC_Os11g43780(LOC_Os11g43780.1) | Synonymous |