Detailed information of SNP:
|
SNP ID:
sf1125975735(Gbrowse)
Chromosome: chr11 Position: 25975735 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 61.17% | 38.83% |
| All Indica | 799 | 39.05% | 60.95% |
| All Japonica | 494 | 94.53% | 5.47% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125975735 | G->A | INTERGENIC | None |