Detailed information of SNP:
|
SNP ID:
sf1125981297(Gbrowse)
Chromosome: chr11 Position: 25981297 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 90.20% | 9.80% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125981297 | T->C | INTERGENIC | None |