Detailed information of SNP:
|
SNP ID:
sf1126001494(Gbrowse)
Chromosome: chr11 Position: 26001494 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 83.39% | 16.61% |
| All Indica | 795 | 72.83% | 27.17% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 59.95% | 40.05% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126001494 | A->G | LOC_Os11g43820(LOC_Os11g43820.1) | INTRON |