Detailed information of SNP:
|
SNP ID:
sf1126009934(Gbrowse)
Chromosome: chr11 Position: 26009934 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 81.64% | 18.36% |
| All Indica | 786 | 69.21% | 30.79% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 373 | 64.88% | 35.12% |
| Indica II | 202 | 60.89% | 39.11% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126009934 | A->G | LOC_Os11g43850(LOC_Os11g43850.1) | Synonymous |