Detailed information of SNP:
|
SNP ID:
sf1126015488(Gbrowse)
Chromosome: chr11 Position: 26015488 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 52.45% | 47.55% |
| All Indica | 793 | 38.34% | 61.66% |
| All Japonica | 495 | 70.91% | 29.09% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 211 | 26.54% | 73.46% |
| Indica Intermediate | 207 | 30.43% | 69.57% |
| Temperate Japonica | 333 | 68.77% | 31.23% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126015488 | C->T | INTERGENIC | None |