Detailed information of SNP:
|
SNP ID:
sf1126020231(Gbrowse)
Chromosome: chr11 Position: 26020231 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.26% | 14.74% |
| All Indica | 798 | 74.81% | 25.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 62.83% | 37.17% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126020231 | G->A | LOC_Os11g43860(LOC_Os11g43860.1) | INTRON |
| sf1126020231 | G->A | LOC_Os11g43860(LOC_Os11g43860.2) | INTRON |