Detailed information of SNP:
|
SNP ID:
sf1126024804(Gbrowse)
Chromosome: chr11 Position: 26024804 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 86.15% | 13.85% |
| All Indica | 775 | 76.00% | 24.00% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 62.02% | 37.98% |
| Indica II | 207 | 85.51% | 14.49% |
| Indica Intermediate | 202 | 91.58% | 8.42% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126024804 | C->T | INTERGENIC | None |