Detailed information of SNP:
|
SNP ID:
sf1126024815(Gbrowse)
Chromosome: chr11 Position: 26024815 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 83.79% | 16.21% |
| All Indica | 794 | 72.80% | 27.20% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 58.82% | 41.18% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126024815 | A->G | INTERGENIC | None |