Detailed information of SNP:
|
SNP ID:
sf1126026241(Gbrowse)
Chromosome: chr11 Position: 26026241 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 59.36% | 40.64% |
| All Indica | 798 | 53.76% | 46.24% |
| All Japonica | 496 | 62.10% | 37.90% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 374 | 49.73% | 50.27% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 334 | 46.71% | 53.29% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126026241 | G->A | INTERGENIC | None |