Detailed information of SNP:
|
SNP ID:
sf1126048849(Gbrowse)
Chromosome: chr11 Position: 26048849 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 78.34% | 21.66% |
| All Indica | 794 | 63.85% | 36.15% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 209 | 45.45% | 54.55% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126048849 | A->G | INTERGENIC | None |