Detailed information of SNP:
|
SNP ID:
sf1126048859(Gbrowse)
Chromosome: chr11 Position: 26048859 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1306 | 78.71% | 21.29% |
| All Indica | 695 | 78.42% | 21.58% |
| All Japonica | 494 | 77.13% | 22.87% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 301 | 85.05% | 14.95% |
| Indica II | 193 | 86.01% | 13.99% |
| Indica Intermediate | 201 | 61.19% | 38.81% |
| Temperate Japonica | 332 | 75.60% | 24.40% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126048859 | A->G | INTERGENIC | None |