Detailed information of SNP:
|
SNP ID:
sf1126053466(Gbrowse)
Chromosome: chr11 Position: 26053466 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1202 | 85.44% | 14.56% |
| All Indica | 599 | 72.45% | 27.55% |
| All Japonica | 490 | 99.39% | 0.61% |
| Aus | 58 | 93.10% | 6.90% |
| Indica I | 246 | 93.90% | 6.10% |
| Indica II | 190 | 33.16% | 66.84% |
| Indica Intermediate | 163 | 85.89% | 14.11% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126053466 | A->G | LOC_Os11g43934(LOC_Os11g43934.2) | UTR_3_PRIME |